GCHP
Getting Started
Quickstart Guide
System Requirements
Key References
User Guide
Download the model
Compile
Create a Run Directory
Download Input Data
Run the model
Configuration files
Configure a run
Output Files
Plot Output Data
Debugging
Supplemental Guides
Load software into your environment
Build required software with Spack
Set up AWS ParallelCluster
Cache Input Data on Fast Drives
Use GCHP Containers
Stretched-Grid Simulation
Output Along a Track
Manage a data archive with bashdatacatalog
Archive output with the History diagnostics
Work with netCDF files
Prepare COARDS-compliant netCDF files
Customize simulations with research options
Understand what error messages mean
Debug GEOS-Chem and HEMCO errors
View GEOS-Chem species properties
Update chemical mechanisms with KPP
View related documentation
Help & Reference
Support Guidelines
Contributing Guidelines
Editing this User Guide
Git Submodules
Terminology
GCHP version history
Upload to Spack
GCHP
Index
Edit on GitHub
Index
Symbols
|
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
W
|
X
Symbols
$PATH
${HOME}
,
[1]
_
_FillValue
command line option
A
absolute path
all
command line option
,
[1]
,
[2]
,
[3]
allPES.log
command line option
B
BackgroundVV
command line option
batch
command line option
boundary_layer
command line option
build
build directory
C
cap_restart
command line option
CC
,
[1]
cdo
command line option
checkpoint file
command line option
_FillValue
all
,
[1]
,
[2]
,
[3]
allPES.log
BackgroundVV
batch
boundary_layer
cap_restart
cdo
constant
,
[1]
Contact
Conventions
DD_AeroDryDep
DD_DustDryDep
DD_DvzAerSnow
DD_DvzAerSnow_Luo
DD_DvzMinVal
DD_F0
DD_Hstar_Old
DD_KOA
decay_of_another_species
Density
e.g.
efolding
EGRESS
Filename
Format
Formula
FullName
gchp.YYYYMMSS_HHmmSSz.log
GCPy
gregorian
halflife
HEMCO
Henry_CR
Henry_CR_Luo
Henry_K0
Henry_K0_Luo
Henry_pKa
History
HistoryCollectionName.rcx
Is_Advected
Is_Aerosol
Is_DryAlt
Is_DryDep
Is_Gas
Is_Hg0
Is_Hg2
Is_HgP
Is_HygroGrowth
Is_Photolysis
Is_RadioNuclide
Is_Tracer
lat
lat:axis
lat:long_name
lat:units
lat_zone
,
[1]
lev
lev:axis
lev:long_name
lev:positive
lev:units
logfile.000000.out
lon
lon:axis
lon:long_name
lon:units
long_name
maintain_mixing_ratio
missing_value
module
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
,
[7]
MP_SizeResAer
MP_SizeResNum
MW_g
Name
ncdump
nco
ncview
netcdf-scripts
none
,
[1]
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
Panoply
ppbv
pressures
Radius
References
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
Snk_Horiz
Snk_Lats
Snk_Mode
Snk_Period
Snk_Value
Snk_Vert
Src_Add
Src_Horiz
Src_Lats
Src_Mode
Src_Pressures
Src_Unit
Src_Value
Src_Vert
standard
stratosphere
surface
,
[1]
time
time:axis
time:calendar
time:long_name
time:units
timestep
Title
troposphere
,
[1]
units
Units
warnings_and_errors.log
WD_AerScavEff
WD_CoarseAer
WD_ConvFacI2G
WD_ConvFacI2G_Luo
WD_Is_H2SO4
WD_Is_HNO3
WD_Is_SO2
WD_KcScaleFac
WD_KcScaleFac_Luo
WD_LiqAndGas
WD_RainoutEff
WD_RainoutEff_Luo
WD_RetFactor
xarray
compile
constant
command line option
,
[1]
Contact
command line option
Conventions
command line option
CS_RES
CXX
,
[1]
D
DD_AeroDryDep
command line option
DD_DustDryDep
command line option
DD_DvzAerSnow
command line option
DD_DvzAerSnow_Luo
command line option
DD_DvzMinVal
command line option
DD_F0
command line option
DD_Hstar_Old
command line option
DD_KOA
command line option
decay_of_another_species
command line option
Density
command line option
dependencies
E
e.g.
command line option
efolding
command line option
EGRESS
command line option
environment
environment variable
$PATH
${HOME}
,
[1]
CC
,
[1]
CS_RES
CXX
,
[1]
ESMF_COMM
ESMF_COMPILER
ESMF_DIR
,
[1]
ESMF_INSTALL_PREFIX
,
[1]
,
[2]
ESMF_ROOT
FC
,
[1]
GC_DATA_ROOT
model
MPI_ROOT
scope_args
,
[1]
scope_dir
SPACK_ROOT
,
[1]
STRETCH_FACTOR
STRETCH_GRID
TARGET_LAT
TARGET_LON
ESMF_COMM
ESMF_COMPILER
ESMF_DIR
,
[1]
ESMF_INSTALL_PREFIX
,
[1]
,
[2]
ESMF_ROOT
F
FC
,
[1]
Filename
command line option
Format
command line option
Formula
command line option
FullName
command line option
G
GC_DATA_ROOT
gchp.YYYYMMSS_HHmmSSz.log
command line option
GCPy
command line option
gregorian
command line option
gridded component
H
halflife
command line option
HEMCO
command line option
Henry_CR
command line option
Henry_CR_Luo
command line option
Henry_K0
command line option
Henry_K0_Luo
command line option
Henry_pKa
command line option
HISTORY
History
command line option
HistoryCollectionName.rcx
command line option
I
Is_Advected
command line option
Is_Aerosol
command line option
Is_DryAlt
command line option
Is_DryDep
command line option
Is_Gas
command line option
Is_Hg0
command line option
Is_Hg2
command line option
Is_HgP
command line option
Is_HygroGrowth
command line option
Is_Photolysis
command line option
Is_RadioNuclide
command line option
Is_Tracer
command line option
L
lat
command line option
lat:axis
command line option
lat:long_name
command line option
lat:units
command line option
lat_zone
command line option
,
[1]
lev
command line option
lev:axis
command line option
lev:long_name
command line option
lev:positive
command line option
lev:units
command line option
logfile.000000.out
command line option
lon
command line option
lon:axis
command line option
lon:long_name
command line option
lon:units
command line option
long_name
command line option
M
maintain_mixing_ratio
command line option
missing_value
command line option
model
module
command line option
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
,
[6]
,
[7]
MP_SizeResAer
command line option
MP_SizeResNum
command line option
MPI_ROOT
MW_g
command line option
N
Name
command line option
ncdump
command line option
nco
command line option
ncview
command line option
netcdf-scripts
command line option
none
command line option
,
[1]
O
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
command line option
P
Panoply
command line option
ppbv
command line option
pressures
command line option
R
Radius
command line option
References
command line option
relative path
restart file
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
command line option
run directory
S
scope_args
,
[1]
scope_dir
script
Snk_Horiz
command line option
Snk_Lats
command line option
Snk_Mode
command line option
Snk_Period
command line option
Snk_Value
command line option
Snk_Vert
command line option
software environment
SPACK_ROOT
,
[1]
Src_Add
command line option
Src_Horiz
command line option
Src_Lats
command line option
Src_Mode
command line option
Src_Pressures
command line option
Src_Unit
command line option
Src_Value
command line option
Src_Vert
command line option
standard
command line option
stratosphere
command line option
STRETCH_FACTOR
STRETCH_GRID
stretched-grid
surface
command line option
,
[1]
T
target face
TARGET_LAT
TARGET_LON
terminal
time
command line option
time:axis
command line option
time:calendar
command line option
time:long_name
command line option
time:units
command line option
timestep
command line option
Title
command line option
troposphere
command line option
,
[1]
U
Units
command line option
units
command line option
W
warnings_and_errors.log
command line option
WD_AerScavEff
command line option
WD_CoarseAer
command line option
WD_ConvFacI2G
command line option
WD_ConvFacI2G_Luo
command line option
WD_Is_H2SO4
command line option
WD_Is_HNO3
command line option
WD_Is_SO2
command line option
WD_KcScaleFac
command line option
WD_KcScaleFac_Luo
command line option
WD_LiqAndGas
command line option
WD_RainoutEff
command line option
WD_RainoutEff_Luo
command line option
WD_RetFactor
command line option
X
xarray
command line option
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