GCHP
Getting Started
Quickstart Guide
System Requirements
Key References
User Guide
Download the model
Compile
Create a Run Directory
Download Input Data
Run the model
Configuration files
Configure a run
Output Files
Plot Output Data
Debugging
Supplemental Guides
Load software into your environment
Build required software with Spack
Set up AWS ParallelCluster
Cache Input Data on Fast Drives
Use GCHP Containers
Stretched-Grid Simulation
Output Along a Track
Manage a data archive with bashdatacatalog
Customize simulations with research options
Understand what error messages mean
Debug GEOS-Chem and HEMCO errors
View GEOS-Chem species properties
Update chemical mechanisms with KPP
View related documentation
Help & Reference
Support Guidelines
Contributing Guidelines
Editing this User Guide
Git Submodules
Terminology
GCHP version history
Upload to Spack
GCHP
»
Index
Edit on GitHub
Index
Symbols
|
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
W
|
X
Symbols
!$OMP COLLAPSE( 2 )
command line option
!$OMP END PARALLEL DO
command line option
!$OMP PARALLEL DO
command line option
!$OMP PRIVATE( I
command line option
!$OMP SCHEDULE( DYNAMIC
command line option
!$OMP SHARED( A )
command line option
$PATH
${HOME}
,
[1]
4 )
command line option
_
_FillValue
command line option
A
absolute path
all
command line option
,
[1]
,
[2]
,
[3]
allPES.log
command line option
B
B )
command line option
BackgroundVV
command line option
batch job file
command line option
boundary_layer
command line option
build
build directory
C
cap_restart
command line option
CC
cdo
command line option
checkpoint file
command line option
!$OMP COLLAPSE( 2 )
!$OMP END PARALLEL DO
!$OMP PARALLEL DO
!$OMP PRIVATE( I
!$OMP SCHEDULE( DYNAMIC
!$OMP SHARED( A )
4 )
_FillValue
all
,
[1]
,
[2]
,
[3]
allPES.log
B )
BackgroundVV
batch job file
boundary_layer
cap_restart
cdo
constant
,
[1]
Contact (or contact)
Conventions (or conventions)
DD_AeroDryDep
DD_DustDryDep
DD_DvzAerSnow
DD_DvzAerSnow_Luo
DD_DvzMinVal
DD_F0
DD_Hstar_Old
DD_KOA
decay_of_another_species
Density
e.g. slurm-jobid.out
efolding
EGRESS
Filename (or filename)
Format (or format)
Formula
FullName
gcchem_internal_checkpoint.YYYYMMDD_HHmmz.nc4
gchp.YYYYMMSS_HHmmSSz.log
GCPy
gregorian
halflife
HEMCO
Henry_CR
Henry_CR_Luo
Henry_K0
Henry_K0_Luo
Henry_pKa
History (or history)
HistoryCollectionName.rcx
Is_Advected
Is_Aerosol
Is_DryAlt
Is_DryDep
Is_Gas
Is_Hg0
Is_Hg2
Is_HgP
Is_HygroGrowth
Is_Photolysis
Is_RadioNuclide
Is_Tracer
J
lat
lat:axis
lat:long_name
lat:units
lat_zone
,
[1]
lev
lev:axis
lev:long_name
lev:positive
lev:units
logfile.000000.out
lon
lon:axis
lon:long_name
lon:units
long_name
maintain_mixing_ratio
missing_value
module load cmake/...
module load flex/...
module load gcc/...
module load git/...
module load netcdf/..
module load openmpi/...
module load perl/...
module purge
MP_SizeResAer
MP_SizeResNum
MW_g
Name
ncdump
nco
ncview
netcdf-scripts
none
,
[1]
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
Panoply
ppbv
pressures
Radius
References (or references)
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
Snk_Horiz
Snk_Lats
Snk_Mode
Snk_Period
Snk_Value
Snk_Vert
Src_Add
Src_Horiz
Src_Lats
Src_Mode
Src_Pressures
Src_Unit
Src_Value
Src_Vert
standard
stratosphere
surface
,
[1]
time
time:axis
time:calendar
time:long_name
time:units
timestep
Title (or title)
troposphere
,
[1]
units
Units
warnings_and_errors.log
WD_AerScavEff
WD_CoarseAer
WD_ConvFacI2G
WD_ConvFacI2G_Luo
WD_Is_H2SO4
WD_Is_HNO3
WD_Is_SO2
WD_KcScaleFac
WD_KcScaleFac_Luo
WD_LiqAndGas
WD_RainoutEff
WD_RainoutEff_Luo
WD_RetFactor
xarray
compile
constant
command line option
,
[1]
Contact (or contact)
command line option
Conventions (or conventions)
command line option
CS_RES
CXX
D
DD_AeroDryDep
command line option
DD_DustDryDep
command line option
DD_DvzAerSnow
command line option
DD_DvzAerSnow_Luo
command line option
DD_DvzMinVal
command line option
DD_F0
command line option
DD_Hstar_Old
command line option
DD_KOA
command line option
decay_of_another_species
command line option
Density
command line option
dependencies
E
e.g. slurm-jobid.out
command line option
efolding
command line option
EGRESS
command line option
environment
environment variable
$PATH
${HOME}
,
[1]
CC
CS_RES
CXX
FC
GC_DATA_ROOT
model
scope_args
,
[1]
scope_dir
SPACK_ROOT
,
[1]
STRETCH_FACTOR
STRETCH_GRID
TARGET_LAT
TARGET_LON
F
FC
Filename (or filename)
command line option
Format (or format)
command line option
Formula
command line option
FullName
command line option
G
GC_DATA_ROOT
gcchem_internal_checkpoint.YYYYMMDD_HHmmz.nc4
command line option
gchp.YYYYMMSS_HHmmSSz.log
command line option
GCPy
command line option
gregorian
command line option
gridded component
H
halflife
command line option
HEMCO
command line option
Henry_CR
command line option
Henry_CR_Luo
command line option
Henry_K0
command line option
Henry_K0_Luo
command line option
Henry_pKa
command line option
HISTORY
History (or history)
command line option
HistoryCollectionName.rcx
command line option
I
Is_Advected
command line option
Is_Aerosol
command line option
Is_DryAlt
command line option
Is_DryDep
command line option
Is_Gas
command line option
Is_Hg0
command line option
Is_Hg2
command line option
Is_HgP
command line option
Is_HygroGrowth
command line option
Is_Photolysis
command line option
Is_RadioNuclide
command line option
Is_Tracer
command line option
J
J
command line option
L
lat
command line option
lat:axis
command line option
lat:long_name
command line option
lat:units
command line option
lat_zone
command line option
,
[1]
lev
command line option
lev:axis
command line option
lev:long_name
command line option
lev:positive
command line option
lev:units
command line option
logfile.000000.out
command line option
lon
command line option
lon:axis
command line option
lon:long_name
command line option
lon:units
command line option
long_name
command line option
M
maintain_mixing_ratio
command line option
missing_value
command line option
model
module load cmake/...
command line option
module load flex/...
command line option
module load gcc/...
command line option
module load git/...
command line option
module load netcdf/..
command line option
module load openmpi/...
command line option
module load perl/...
command line option
module purge
command line option
MP_SizeResAer
command line option
MP_SizeResNum
command line option
MW_g
command line option
N
Name
command line option
ncdump
command line option
nco
command line option
ncview
command line option
netcdf-scripts
command line option
none
command line option
,
[1]
O
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
command line option
P
Panoply
command line option
ppbv
command line option
pressures
command line option
R
Radius
command line option
References (or references)
command line option
relative path
restart file
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
command line option
run directory
S
scope_args
,
[1]
scope_dir
script
Snk_Horiz
command line option
Snk_Lats
command line option
Snk_Mode
command line option
Snk_Period
command line option
Snk_Value
command line option
Snk_Vert
command line option
software environment
SPACK_ROOT
,
[1]
Src_Add
command line option
Src_Horiz
command line option
Src_Lats
command line option
Src_Mode
command line option
Src_Pressures
command line option
Src_Unit
command line option
Src_Value
command line option
Src_Vert
command line option
standard
command line option
stratosphere
command line option
STRETCH_FACTOR
STRETCH_GRID
stretched-grid
surface
command line option
,
[1]
T
target face
TARGET_LAT
TARGET_LON
terminal
time
command line option
time:axis
command line option
time:calendar
command line option
time:long_name
command line option
time:units
command line option
timestep
command line option
Title (or title)
command line option
troposphere
command line option
,
[1]
U
Units
command line option
units
command line option
W
warnings_and_errors.log
command line option
WD_AerScavEff
command line option
WD_CoarseAer
command line option
WD_ConvFacI2G
command line option
WD_ConvFacI2G_Luo
command line option
WD_Is_H2SO4
command line option
WD_Is_HNO3
command line option
WD_Is_SO2
command line option
WD_KcScaleFac
command line option
WD_KcScaleFac_Luo
command line option
WD_LiqAndGas
command line option
WD_RainoutEff
command line option
WD_RainoutEff_Luo
command line option
WD_RetFactor
command line option
X
xarray
command line option
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v: 14.2.2
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