GCHP
Getting Started
Quickstart Guide
System Requirements
Key References
User Guide
Download the model
Compile
Create a Run Directory
Download Input Data
Run the model
Configuration files
Configure a run
Output Files
Plot Output Data
Debugging
Supplemental Guides
Build Dependencies
Set up AWS ParallelCluster
Cache Input Data on Fast Drives
Use GCHP Containers
Stretched-Grid Simulation
Output Along a Track
Manage a data archive with bashdatacatalog
Debug GEOS-Chem and HEMCO errors
View GEOS-Chem species properties
Update chemical mechanisms with KPP
View related documentation
Help & Reference
Support Guidelines
Contributing Guidelines
Editing this User Guide
Git Submodules
Terminology
GCHP version history
Upload to Spack
GCHP
»
Index
Edit on GitHub
Index
Symbols
|
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
O
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P
|
R
|
S
|
T
|
U
|
W
|
X
Symbols
!$OMP COLLAPSE( 2 )
command line option
!$OMP END PARALLEL DO
command line option
!$OMP PARALLEL DO
command line option
!$OMP PRIVATE( I
command line option
!$OMP SCHEDULE( DYNAMIC
command line option
!$OMP SHARED( A )
command line option
--cs_res_out 48
command line option
--dim_format_in checkpoint
command line option
--dim_format_out checkpoint
command line option
--sg_params_out 3.0 260.0 40.0
command line option
-i GEOSChem.Restart.20190701_0000z.c90.nc
command line option
-o sg_restart_c48_3_260_40.nc
command line option
4 )
command line option
_
_FillValue
command line option
A
absolute path
allPES.log
command line option
B
B )
command line option
BackgroundVV
command line option
batch job file
command line option
build
build directory
C
cap_restart
command line option
CC
cdo
command line option
checkpoint file
command line option
!$OMP COLLAPSE( 2 )
!$OMP END PARALLEL DO
!$OMP PARALLEL DO
!$OMP PRIVATE( I
!$OMP SCHEDULE( DYNAMIC
!$OMP SHARED( A )
--cs_res_out 48
--dim_format_in checkpoint
--dim_format_out checkpoint
--sg_params_out 3.0 260.0 40.0
-i GEOSChem.Restart.20190701_0000z.c90.nc
-o sg_restart_c48_3_260_40.nc
4 )
_FillValue
allPES.log
B )
BackgroundVV
batch job file
cap_restart
cdo
Contact (or contact)
Conventions (or conventions)
DD_AeroDryDep
DD_DustDryDep
DD_DvzAerSnow
DD_DvzAerSnow_Luo
DD_DvzMinVal
DD_F0
DD_Hstar_Old
DD_KOA
Density
e.g. slurm-jobid.out
EGRESS
Filename (or filename)
Format (or format)
Formula
FullName
gcchem_internal_checkpoint.YYYYMMDD_HHmmz.nc4
gchp.YYYYMMSS_HHmmSSz.log
GCPy
gregorian
Henry_CR
Henry_CR_Luo
Henry_K0
Henry_K0_Luo
Henry_pKa
History (or history)
HistoryCollectionName.rcx
Is_Advected
Is_Aerosol
Is_DryAlt
Is_DryDep
Is_Gas
Is_Hg0
Is_Hg2
Is_HgP
Is_HygroGrowth
Is_Photolysis
Is_RadioNuclide
J
lat
lat:axis
lat:long_name
lat:units
lev
lev:axis
lev:long_name
lev:positive
lev:units
logfile.000000.out
lon
lon:axis
lon:long_name
lon:units
long_name
missing_value
module load cmake/...
module load gcc/...
module load git/...
module load netcdf/..
module load openmpi/...
module load perl/...
module purge
MP_SizeResAer
MP_SizeResNum
MW_g
Name
ncdump
nco
ncview
netcdf-scripts
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
Panoply
Radius
References (or references)
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
standard
time
time:axis
time:calendar
time:long_name
time:units
Title (or title)
units
warnings_and_errors.log
WD_AerScavEff
WD_CoarseAer
WD_ConvFacI2G
WD_ConvFacI2G_Luo
WD_Is_H2SO4
WD_Is_HNO3
WD_Is_SO2
WD_KcScaleFac
WD_KcScaleFac_Luo
WD_LiqAndGas
WD_RainoutEff
WD_RainoutEff_Luo
WD_RetFactor
xarray
compile
Contact (or contact)
command line option
Conventions (or conventions)
command line option
CS_RES
CXX
D
DD_AeroDryDep
command line option
DD_DustDryDep
command line option
DD_DvzAerSnow
command line option
DD_DvzAerSnow_Luo
command line option
DD_DvzMinVal
command line option
DD_F0
command line option
DD_Hstar_Old
command line option
DD_KOA
command line option
Density
command line option
dependencies
E
e.g. slurm-jobid.out
command line option
EGRESS
command line option
environment
environment variable
CC
CS_RES
CXX
FC
GC_DATA_ROOT
OMP_NUM_THREADS
,
[1]
STRETCH_FACTOR
STRETCH_GRID
TARGET_LAT
TARGET_LON
F
FC
Filename (or filename)
command line option
Format (or format)
command line option
Formula
command line option
FullName
command line option
G
GC_DATA_ROOT
gcchem_internal_checkpoint.YYYYMMDD_HHmmz.nc4
command line option
gchp.YYYYMMSS_HHmmSSz.log
command line option
GCPy
command line option
gregorian
command line option
gridded component
H
Henry_CR
command line option
Henry_CR_Luo
command line option
Henry_K0
command line option
Henry_K0_Luo
command line option
Henry_pKa
command line option
HISTORY
History (or history)
command line option
HistoryCollectionName.rcx
command line option
I
Is_Advected
command line option
Is_Aerosol
command line option
Is_DryAlt
command line option
Is_DryDep
command line option
Is_Gas
command line option
Is_Hg0
command line option
Is_Hg2
command line option
Is_HgP
command line option
Is_HygroGrowth
command line option
Is_Photolysis
command line option
Is_RadioNuclide
command line option
J
J
command line option
L
lat
command line option
lat:axis
command line option
lat:long_name
command line option
lat:units
command line option
lev
command line option
lev:axis
command line option
lev:long_name
command line option
lev:positive
command line option
lev:units
command line option
logfile.000000.out
command line option
lon
command line option
lon:axis
command line option
lon:long_name
command line option
lon:units
command line option
long_name
command line option
M
missing_value
command line option
module load cmake/...
command line option
module load gcc/...
command line option
module load git/...
command line option
module load netcdf/..
command line option
module load openmpi/...
command line option
module load perl/...
command line option
module purge
command line option
MP_SizeResAer
command line option
MP_SizeResNum
command line option
MW_g
command line option
N
Name
command line option
ncdump
command line option
nco
command line option
ncview
command line option
netcdf-scripts
command line option
O
OMP_NUM_THREADS
,
[1]
OutputDir/GEOSChem.HistoryCollectionName.YYYYMMDD_HHmmz.nc4
command line option
P
Panoply
command line option
R
Radius
command line option
References (or references)
command line option
relative path
restart file
Restarts/GEOSChem.Restart.YYYYMMDD_HHmmz.cN.nc4
command line option
run directory
S
script
software environment
standard
command line option
STRETCH_FACTOR
STRETCH_GRID
stretched-grid
T
target face
TARGET_LAT
TARGET_LON
terminal
time
command line option
time:axis
command line option
time:calendar
command line option
time:long_name
command line option
time:units
command line option
Title (or title)
command line option
U
units
command line option
W
warnings_and_errors.log
command line option
WD_AerScavEff
command line option
WD_CoarseAer
command line option
WD_ConvFacI2G
command line option
WD_ConvFacI2G_Luo
command line option
WD_Is_H2SO4
command line option
WD_Is_HNO3
command line option
WD_Is_SO2
command line option
WD_KcScaleFac
command line option
WD_KcScaleFac_Luo
command line option
WD_LiqAndGas
command line option
WD_RainoutEff
command line option
WD_RainoutEff_Luo
command line option
WD_RetFactor
command line option
X
xarray
command line option
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